GitHub - ckmah/bento-tools: A Python toolkit for subcellular analysis of spatial transcriptomics data
Bento is a Python toolkit for performing subcellular analysis of spatial transcriptomics data. Install with Python >=3.8 and <3.11: Check out the documentation for the installation guide, tutorials, API and more! Read and cite our preprint if you use Bento in your work.
Bento: A toolkit for subcellular analysis of spatial transcriptomics data
Advances in spatial transcriptomics technologies produce RNA imaging data at increasingly higher throughput and scale. Current computational methods identify and measure the spatial relationships between cell-types, but do not leverage the spatial information of individual RNA molecules to reveal subcellular spatiotemporal dynamics of RNA processing.